![]() ![]() ![]() For an explanation of the contents and the Maybe the above should be edited into the original post to make it clearer why the tutorial is needed.Binaries (64 bit), all dlls needed, the examples, Upgrading Ubuntu is beyond the scope of this site. Our pipeline requires 1.15.1 due to bug fixes and feature enhancements we depend on that are not in earlier versions. If you do not care about LTS, I believe 23.04 due out shortly has the latest htslib 1.16.1. The next LTS is not scheduled until April 2024. And even then, may not update to the latest LTS. ![]() Ubuntu LTS 22.04 htslib / samtools / bcftools v1.13.Ubuntu LTS 20.04 htslib / samtools / bcftools v1.10.Ubuntu LTS 18.04 htslib / samtools / bcftools v1.7.For the most part, newer versions of htslib / samtools / bcftools can be "backported" to the older OS releases.įor example, using your instructions on these platforms gets you: The original script is to get the latest version (at that time) to install and operate. The apt repository only ports the bioionformatics tools just before the release of that Ubuntu software version. Install Updates and Required Packages sudo apt-get updateĮxport To Path And Refresh export PATH="$PATH:/usr/bin/bcftools-1.9"Įxport PATH="$PATH:/usr/bin/samtools-1.9"Īs mentioned in the previous, similar comment, you get old versions of htslib / samtools / bcftools this way. Probably most people do not have that luxury. It's likely it was just me, but maybe there are a few other people like me who will benefit from being able to avoid the process. Just thought I would contribute this since figuring it all out was a super confusing process consisting of a few hundred google searches. ![]()
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